Index
$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z
A
 amigo.api
 amigo.data.golr
 amigo.data.server
 amigo.data.statistics
 amigo.data.xrefs
 amigo.linker
 amigo.version
 anchor, amigo.linker
 annotation_evidence, amigo.data.statistics
 annotation_overview, amigo.data.statistics
 annotation_source, amigo.data.statistics
 api, amigo.api
 api.js
 app_base, amigo.data.server
B
 bbop_img_star, amigo.data.server
E
 evidence_codes, amigo.data.server
F
 Functions
G
 get_image_resource, amigo.data.server
 golr, amigo.data.golr
 golr.js
 golr_base, amigo.data.server
 gp_types, amigo.data.server
H
 html_base, amigo.data.server
I
 image_base, amigo.data.server
L
 linker, amigo.linker
 linker.js
O
 ontologies, amigo.data.server
R
 release, amigo.version
 revision, amigo.version
S
 server, amigo.data.server
 server.js
 sources, amigo.data.server
 species, amigo.data.server
 species_map, amigo.data.server
 statistics.js
T
 term_id_p, amigo.data.server
 term_regexp, amigo.data.server
U
 url, amigo.linker
V
 Variables
 version.js
X
 xrefs, amigo.data.xrefs
 xrefs.js
Core for AmiGO 2 remote functionality.
This package was automatically created during an AmiGO 2 installation from the YAML configuration files that AmiGO pulls in.
This package was automatically created during an AmiGO 2 installation.
This package was automatically created during an AmiGO 2 installation.
This package was automatically created during an AmiGO 2 installation from the GO.xrf_abbs file at: “http://www.geneontology.org/doc/GO.xrf_abbs”.
Generic AmiGO linking function.
This package was automatically created during the release process and contains its version information--this is the release of the API that you have.
amigo.linker.prototype.anchor = function(args,
xid)
Return a link as a chunk of HTML, all ready to consume in a display.
TBD
amigo.data.statistics.annotation_overview
TBD
TBD
amigo.api = function()
Contructor for the AmiGO API object.
var app_base = meta_data.app_base; this.app_base = function()
Access to AmiGO variable app_base.
var bbop_img_star = meta_data.bbop_img_star; this.bbop_img_star = function()
Access to AmiGO variable bbop_img_star.
var evidence_codes = meta_data.evidence_codes; this.evidence_codes = function()
Access to AmiGO variable evidence_codes.
this.get_image_resource = function(resource)
Get a named resource from the meta_data hash if possible.
amigo.data.golr
The configuration for the data.
var golr_base = meta_data.golr_base; this.golr_base = function()
Access to AmiGO variable golr_base.
var gp_types = meta_data.gp_types; this.gp_types = function()
Access to AmiGO variable gp_types.
var html_base = meta_data.html_base; this.html_base = function()
Access to AmiGO variable html_base.
var image_base = meta_data.image_base; this.image_base = function()
Access to AmiGO variable image_base.
amigo.linker = function ()
Create an object that can make URLs and/or anchors.
var ontologies = meta_data.ontologies; this.ontologies = function()
Access to AmiGO variable ontologies.
amigo.version.release
Partial version for this library: release (date-like) information.
amigo.version.revision
Partial version for this library; revision (major/minor version numbers) information.
amigo.data.server = function()
The configuration for the server settings.
var sources = meta_data.sources; this.sources = function()
Access to AmiGO variable sources.
var species = meta_data.species; this.species = function()
Access to AmiGO variable species.
var species_map = meta_data.species_map; this.species_map = function()
Access to AmiGO variable species_map.
this.term_id_p = function(term_id)
True or false on whether or not a string looks like a GO term id.
var term_regexp = meta_data.term_regexp; this.term_regexp = function()
Access to AmiGO variable term_regexp.
amigo.linker.prototype.url = function (id,
xid)
Return a url string.
amigo.data.xrefs
All the external references that we know about.
Close